Chemical Aspects

• Interface for chemical kinetic models in MOOSEGUI
  • Introduction
  • **TODO** What are chemical kinetic models?
  • Levels of model
  • Numerical methods
  • Using Kinetikit 12
  • Model layout and icons
  • Model operations
  • Model building
• Load - Run - Save models
  • Load a Kinetic Model
  • Load an SBML Model
  • Load a CSpace Model
  • Save a model into SBML format
  • Save a model
• Simple Examples
  • Set-up a kinetic solver and model
  • Building a chemical Model from Parts
  • Cross-Compartment Reaction Systems
  • Tweaking Parameters
  • Models’ Demonstration
  • Reaction Diffusion Models
  • A Turing Model
  • A Spatial Bistable Model
  • Reaction Diffusion in Neurons
  • Manipulating Chemical Models
  • Transport in branching dendritic tree
• Tutorials
  • Finding Steady State (CSpace)
  • Building Simple Reaction Model
  • Define a kinetic model using the scripting